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homemade matlab software package based on opennanopore (version 1.2)  (MathWorks Inc)


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    MathWorks Inc homemade matlab software package based on opennanopore (version 1.2)
    Overall scheme of nanospectral data analysis. Raw current blockade signals stored in ABFs are analyzed by a homemade software package based on <t>OpenNanopore</t> to extract nanospectra, which are filtered to remove those with short duration times. The orientations of nanospectra are determined by comparing original and flipped empirical nanospectra with the theoretical nanospectra of the peptide, and backward empirical nanospectra are flipped. The averaging or progressive alignment method is employed to generate a consensus empirical nanospectrum. A theoretical nanospectrum is generated using the 1AAV or 1AAV-P model. Finally, the empirical consensus nanospectrum is aligned with the theoretical nanospectrum using DTW to find an alignment between the two nanospectra, and the PCC of the aligned nanospectra is computed.
    Homemade Matlab Software Package Based On Opennanopore (Version 1.2), supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/homemade matlab software package based on opennanopore (version 1.2)/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    homemade matlab software package based on opennanopore (version 1.2) - by Bioz Stars, 2026-03
    90/100 stars

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    1) Product Images from "Calling the amino acid sequence of a protein/peptide from the nanospectrum produced by a sub-nanometer diameter pore"

    Article Title: Calling the amino acid sequence of a protein/peptide from the nanospectrum produced by a sub-nanometer diameter pore

    Journal: Scientific Reports

    doi: 10.1038/s41598-022-22305-x

    Overall scheme of nanospectral data analysis. Raw current blockade signals stored in ABFs are analyzed by a homemade software package based on OpenNanopore to extract nanospectra, which are filtered to remove those with short duration times. The orientations of nanospectra are determined by comparing original and flipped empirical nanospectra with the theoretical nanospectra of the peptide, and backward empirical nanospectra are flipped. The averaging or progressive alignment method is employed to generate a consensus empirical nanospectrum. A theoretical nanospectrum is generated using the 1AAV or 1AAV-P model. Finally, the empirical consensus nanospectrum is aligned with the theoretical nanospectrum using DTW to find an alignment between the two nanospectra, and the PCC of the aligned nanospectra is computed.
    Figure Legend Snippet: Overall scheme of nanospectral data analysis. Raw current blockade signals stored in ABFs are analyzed by a homemade software package based on OpenNanopore to extract nanospectra, which are filtered to remove those with short duration times. The orientations of nanospectra are determined by comparing original and flipped empirical nanospectra with the theoretical nanospectra of the peptide, and backward empirical nanospectra are flipped. The averaging or progressive alignment method is employed to generate a consensus empirical nanospectrum. A theoretical nanospectrum is generated using the 1AAV or 1AAV-P model. Finally, the empirical consensus nanospectrum is aligned with the theoretical nanospectrum using DTW to find an alignment between the two nanospectra, and the PCC of the aligned nanospectra is computed.

    Techniques Used: Software, Generated



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    Overall scheme of nanospectral data analysis. Raw current blockade signals stored in ABFs are analyzed by a homemade software package based on <t>OpenNanopore</t> to extract nanospectra, which are filtered to remove those with short duration times. The orientations of nanospectra are determined by comparing original and flipped empirical nanospectra with the theoretical nanospectra of the peptide, and backward empirical nanospectra are flipped. The averaging or progressive alignment method is employed to generate a consensus empirical nanospectrum. A theoretical nanospectrum is generated using the 1AAV or 1AAV-P model. Finally, the empirical consensus nanospectrum is aligned with the theoretical nanospectrum using DTW to find an alignment between the two nanospectra, and the PCC of the aligned nanospectra is computed.
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    Overall scheme of nanospectral data analysis. Raw current blockade signals stored in ABFs are analyzed by a homemade software package based on <t>OpenNanopore</t> to extract nanospectra, which are filtered to remove those with short duration times. The orientations of nanospectra are determined by comparing original and flipped empirical nanospectra with the theoretical nanospectra of the peptide, and backward empirical nanospectra are flipped. The averaging or progressive alignment method is employed to generate a consensus empirical nanospectrum. A theoretical nanospectrum is generated using the 1AAV or 1AAV-P model. Finally, the empirical consensus nanospectrum is aligned with the theoretical nanospectrum using DTW to find an alignment between the two nanospectra, and the PCC of the aligned nanospectra is computed.
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    Overall scheme of nanospectral data analysis. Raw current blockade signals stored in ABFs are analyzed by a homemade software package based on <t>OpenNanopore</t> to extract nanospectra, which are filtered to remove those with short duration times. The orientations of nanospectra are determined by comparing original and flipped empirical nanospectra with the theoretical nanospectra of the peptide, and backward empirical nanospectra are flipped. The averaging or progressive alignment method is employed to generate a consensus empirical nanospectrum. A theoretical nanospectrum is generated using the 1AAV or 1AAV-P model. Finally, the empirical consensus nanospectrum is aligned with the theoretical nanospectrum using DTW to find an alignment between the two nanospectra, and the PCC of the aligned nanospectra is computed.
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    Overall scheme of nanospectral data analysis. Raw current blockade signals stored in ABFs are analyzed by a homemade software package based on <t>OpenNanopore</t> to extract nanospectra, which are filtered to remove those with short duration times. The orientations of nanospectra are determined by comparing original and flipped empirical nanospectra with the theoretical nanospectra of the peptide, and backward empirical nanospectra are flipped. The averaging or progressive alignment method is employed to generate a consensus empirical nanospectrum. A theoretical nanospectrum is generated using the 1AAV or 1AAV-P model. Finally, the empirical consensus nanospectrum is aligned with the theoretical nanospectrum using DTW to find an alignment between the two nanospectra, and the PCC of the aligned nanospectra is computed.
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    Overall scheme of nanospectral data analysis. Raw current blockade signals stored in ABFs are analyzed by a homemade software package based on <t>OpenNanopore</t> to extract nanospectra, which are filtered to remove those with short duration times. The orientations of nanospectra are determined by comparing original and flipped empirical nanospectra with the theoretical nanospectra of the peptide, and backward empirical nanospectra are flipped. The averaging or progressive alignment method is employed to generate a consensus empirical nanospectrum. A theoretical nanospectrum is generated using the 1AAV or 1AAV-P model. Finally, the empirical consensus nanospectrum is aligned with the theoretical nanospectrum using DTW to find an alignment between the two nanospectra, and the PCC of the aligned nanospectra is computed.
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    Overall scheme of nanospectral data analysis. Raw current blockade signals stored in ABFs are analyzed by a homemade software package based on OpenNanopore to extract nanospectra, which are filtered to remove those with short duration times. The orientations of nanospectra are determined by comparing original and flipped empirical nanospectra with the theoretical nanospectra of the peptide, and backward empirical nanospectra are flipped. The averaging or progressive alignment method is employed to generate a consensus empirical nanospectrum. A theoretical nanospectrum is generated using the 1AAV or 1AAV-P model. Finally, the empirical consensus nanospectrum is aligned with the theoretical nanospectrum using DTW to find an alignment between the two nanospectra, and the PCC of the aligned nanospectra is computed.

    Journal: Scientific Reports

    Article Title: Calling the amino acid sequence of a protein/peptide from the nanospectrum produced by a sub-nanometer diameter pore

    doi: 10.1038/s41598-022-22305-x

    Figure Lengend Snippet: Overall scheme of nanospectral data analysis. Raw current blockade signals stored in ABFs are analyzed by a homemade software package based on OpenNanopore to extract nanospectra, which are filtered to remove those with short duration times. The orientations of nanospectra are determined by comparing original and flipped empirical nanospectra with the theoretical nanospectra of the peptide, and backward empirical nanospectra are flipped. The averaging or progressive alignment method is employed to generate a consensus empirical nanospectrum. A theoretical nanospectrum is generated using the 1AAV or 1AAV-P model. Finally, the empirical consensus nanospectrum is aligned with the theoretical nanospectrum using DTW to find an alignment between the two nanospectra, and the PCC of the aligned nanospectra is computed.

    Article Snippet: The nanospectra in ABFs were extracted using a homemade MATLAB software package based on OpenNanopore (version 1.2) .

    Techniques: Software, Generated